ShoRAH is an open source project for the analysis of next generation sequencing data. It is designed to analyse genetically heterogeneous samples. Its tools are written in different programming languages and provide alignment, error correction, haplotype reconstruction and estimation of the frequency of the different genetic variants present in a mixed sample.
This aims at explaining how to install and run ShoRAH. We hope that when the installation is done, it takes < 30 minutes to learn how to use it.