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Each run of
diri_sampler creates five files that store different information. Here below a short description of what is found in these files.
*cor.fas: corrected reads
This file (e.g.
sample-cor.fas) contains the corrected reads. The number of reads in this file is (approximately) equal to the number of reads in the input file.
*freq.csv: haplotype frequencies
At each iteration in the
diri_sampler history, a number of haplotypes (clusters) exist with a number of reads associated to them. Each row of this csv file is a haplotype created in the history. On the columns the number of reads for it at each iteration.
*support.fas: haplotype support
This is where the results are stored. Already described in Local analysis.
*.dbg: debugging information
Most of the users will not find this information useful.
*.smp: sampling information
At each iteration this file saves the number of clusters present, the number of untouched reads (those which have not been assigned to a different cluster), current estimate for theta and gamma.